Locating pin
Did you remove the locating pin (part # 24 in the diagram clutch-pedal-schematic)? The locating pin should be a small rolled pin (approx. 1/8" in diameter) that you would use a thin drift punch to drive out. The locating pin is not the pedal trunnion (circled part # 23 in diagram) nor the pedal bush (part # 20 I think that's the part # it's kinda blurry). The locating pin is on the outside of the bracket. There should be a small hole the locating pin passes thru on the outside of the bracket shown in pic clutch_pedal_2. The locating pin hole is vertical not horizontal. The locating pin passes thru the bracket and then thru the pedal shaft thus securing the pedal shaft to the bracket.
If you go gorilla on the pedal shaft and try to drive it out before you remove the locating pin you'll probably need a whole new assembly.
Hope that helps,
Cheers
Walker
1968 Series IIA-"Ronnie"
88" SW, 2.25L Petrol, LHD